01. Araştırma Çıktıları | TR-Dizin | WoS | Scopus | PubMed
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Article Citation - WoS: 1Citation - Scopus: 22d Model of a Biomass Single Particle Pyrolysis-Analysis of the Influence of Fiber Orientation on the Thermal Decomposition Process(Mdpi, 2025) Hercel, Paulina; Orhon, Atahan; Jozwik, Michal; Kardas, DariuszUnderstanding the influence of heat transfer on the pyrolysis process is crucial for optimizing industrial biofuel production processes. While numerous scientific studies focus on experimental investigations of pyrolysis using laboratory-scale devices, many neglect the essential role of thermal energy in initiating and controlling thermal decomposition processes. This study presents a transient two-dimensional numerical model of biomass single-particle pyrolysis, which includes the energy balance, mass conservation equations and pyrolysis gas pressure and velocity equations. The model employs explicit numerical methods to manage the high computational demands of 2D transient simulations, but is successfully validated with the use of experimental data found in the literature. The model reflects the heterogeneous structure of wood by using different thermal conductivity coefficients depending on the wooden fibers' orientation. The results demonstrate the impact of fiber orientation on the heat transfer and thermal decomposition processes. The anisotropic properties of wood led to varied temperature fields and pyrolysis decomposition stages, aligning well with experimental data, thus validating the model's accuracy. The proposed approach can provide a better understanding and lead to improvement in biofuel production processes, enabling more efficient and controlled conversion of biomass into fuel. By optimizing the pyrolysis process, it contributes to the development of sustainable energy preservation and regeneration methods, supporting a shift towards more sustainable fuel production patterns using renewable biomass resources like wood.Article Citation - WoS: 6Citation - Scopus: 72db: a Proteomics Database for Storage, Analysis, Presentation, and Retrieval of Information From Mass Spectrometric Experiments(Biomed Central Ltd, 2008) Allmer, Jens; Kuhlgert, Sebastian; Hippler, MichaelBackground: The amount of information stemming from proteomics experiments involving (multi dimensional) separation techniques, mass spectrometric analysis, and computational analysis is ever-increasing. Data from such an experimental workflow needs to be captured, related and analyzed. Biological experiments within this scope produce heterogenic data ranging from pictures of one or two-dimensional protein maps and spectra recorded by tandem mass spectrometry to text-based identifications made by algorithms which analyze these spectra. Additionally, peptide and corresponding protein information needs to be displayed. Results: In order to handle the large amount of data from computational processing of mass spectrometric experiments, automatic import scripts are available and the necessity for manual input to the database has been minimized. Information is in a generic format which abstracts from specific software tools typically used in such an experimental workflow. The software is therefore capable of storing and cross analysing results from many algorithms. A novel feature and a focus of this database is to facilitate protein identification by using peptides identified from mass spectrometry and link this information directly to respective protein maps. Additionally, our application employs spectral counting for quantitative presentation of the data. All information can be linked to hot spots on images to place the results into an experimental context. A summary of identified proteins, containing all relevant information per hot spot, is automatically generated, usually upon either a change in the underlying protein models or due to newly imported identifications. The supporting information for this report can be accessed in multiple ways using the user interface provided by the application. Conclusion: We present a proteomics database which aims to greatly reduce evaluation time of results from mass spectrometric experiments and enhance result quality by allowing consistent data handling. Import functionality, automatic protein detection, and summary creation act together to facilitate data analysis. In addition, supporting information for these findings is readily accessible via the graphical user interface provided. The database schema and the implementation, which can easily be installed on virtually any server, can be downloaded in the form of a compressed file from our project webpage.Article Citation - WoS: 4Citation - Scopus: 53d Helmholtz Coil System Setup for Thermal Conductivity Measurements of Magnetic Nanofluids(Pergamon-Elsevier Science Ltd, 2023) Alsangur, Rahime; Dog, Serkan; Ateş, Ismet; Turgut, Alpaslan; Çetin, LeventThis study aims to design a mechatronic system that involves a 3D Helmholtz coil system implemented with the 3 omega; method to measure the thermal conductivity of magnetic nanofluids under uniform and rotating magnetic fields. For this purpose, a 3D Helmholtz coil system was designed and manufactured to generate a uniform and rotating magnetic field up to 400 G. First, the uniformity and rotation abilities of the magnetic field generated by the system were investigated numerically and experimentally. The investigations pointed out that the 3D Helmholtz coil system can generate a uniform magnetic field in 1D, 2D, and 3D with a maximum non-uniformity factor of 0.0016. After that, the thermal conductivity of Fe3O4 - water magnetic nanofluid samples with 1, 2, 3, 4, and 4.8 vol.% were measured under 1D, 2D, and 3D uniform magnetic field application. The magnetic field was applied at different direction angles between X, Y, and Z axes in the Cartesian coordinate system. The results pointed out that the thermal conductivity of the samples increases as the magnetic field and particle concentration increase. The maximum thermal conductivity enhancement was observed as similar to 9.1% and the minimum thermal conductivity was observed as similar to 1.9% when the magnetic field is applied in parallel and perpendicular directions, respectively. The measurement results also pointed out that under the external uniform magnetic field application at 2D and 3D, thermal conductivity enhancement is less affected by the particle concentration increment.Correction 44th Febs Congress, From Molecules To Living Systems (2019) Posters (vol 9, Pg 65, 2019)(Wiley, 2019) Said, Harun Muayad; Gul, Guler; Akdoğan, Gül; Soysal, Yasemin[Abstract Not Available]Review An Abbreviated History of Liver Transplantation(Wolters Kluwer Medknow Publications, 2024) Schilsky, M.L.; Emre, S.H.[No abstract available]Article Citation - WoS: 1Ablation of Atrioventricular Nodal Reentrant Tachycardia With Focal Cryoablation, Compared With Radiofrequency Ablation: Single-Center Experience(Arquivos Brasileiros Cardiologia, 2024) Topaloğlu, Caner; Fici, Francesco; Van de Borne, Philippe; Taşkın, Uğur; Doğduş, Mustafa; Saygı, Serkan; Tengiz, İstemihanBackground: The ablation of atrioventricular nodal reentrant tachycardia (AVNRT) with cryoablation is an alternative to radiofrequency (RF) ablation in patients due to the low risk of total atrioventricular block. An increase in early-late recurrences after cryoablation is reported as an important disadvantage. Objectives: In this study, we aimed to compare the acute procedural success and the long-term recurrence rates of patients, with AVNRT who underwent methods. Methods: 73 patients with AVNRT were included in the study: 32 with cryoablation and 41 with RF ablation. There was no statistically significant difference between acute procedural success in methods. The ablation procedure was performed by an operator experienced in arrhythmology. The choice of RF or cryoablation was made in the electrophysiology laboratory based on the material already available during the procedure. After the procedure, the patients were evaluated every 3 months for 2 years in polyclinic control. The significance level adopted in the statistical analysis was 5%. Results: The 2 groups of patients were homogeneous. The fluoroscopy time (p<0.001) was shorter, but atrium-his (p=0.004) and his-ventricular (p=0.015) times were longer in the cryoablation group. There was no significant difference, in terms of acute procedural success, post-procedure jump without a single echo, and presence of echo and jump. Conclusions: Cryoablation requires less fluoroscopy time and is a safe non-inferior alternative to RF ablation in patients with AVNRT. The risk of AV block is a significant problem with the use of RF energy, making it less suitable for use in young and physically active patients.Article Citation - Scopus: 1Ablation of Atrioventricular Nodal Reentrant Tachycardia With Focal Cryoablation, Compared With Radiofrequency Ablation: Single-Center Experience(2024) Topaloğlu, C.; Fici, F.; Borne, P.V.; Taşkin, U.; Dogdus, M.; Saygi, S.; Tengiz, I.BACKGROUND: The ablation of atrioventricular nodal reentrant tachycardia (AVNRT) with cryoablation is an alternative to radiofrequency (RF) ablation in patients due to the low risk of total atrioventricular block. An increase in early-late recurrences after cryoablation is reported as an important disadvantage. OBJECTIVES: In this study, we aimed to compare the acute procedural success and the long-term recurrence rates of patients, with AVNRT who underwent methods. METHODS: 73 patients with AVNRT were included in the study: 32 with cryoablation and 41 with RF ablation. There was no statistically significant difference between acute procedural success in methods. The ablation procedure was performed by an operator experienced in arrhythmology. The choice of RF or cryoablation was made in the electrophysiology laboratory based on the material already available during the procedure. After the procedure, the patients were evaluated every 3 months for 2 years in polyclinic control. The significance level adopted in the statistical analysis was 5%. RESULTS: The 2 groups of patients were homogeneous.Article Citation - WoS: 9Citation - Scopus: 8Abnormal Cross Frequency Coupling of Brain Electroencephalographic Oscillations Related To Visual Oddball Task in Parkinson's Disease With Mild Cognitive Impairment(Sage Publications Inc, 2023) Bayraktaroglu, Zubeyir; Akturk, Tuba; Yener, Görsev; de Graaf, Tom A.; Hanoglu, Lutfu; Yildirim, Ebru; Gunduz, Duygu HunerliParkinson's disease (PD) is a movement disorder caused by degeneration in dopaminergic neurons. During the disease course, most of PD patients develop mild cognitive impairment (PDMCI) and dementia, especially affecting frontal executive functions. In this study, we tested the hypothesis that PDMCI patients may be characterized by abnormal neurophysiological oscillatory mechanisms coupling frontal and posterior cortical areas during cognitive information processing. To test this hypothesis, event-related EEG oscillations (EROs) during counting visual target (rare) stimuli in an oddball task were recorded in healthy controls (HC; N = 51), cognitively unimpaired PD patients (N = 48), and PDMCI patients (N = 53). Hilbert transform served to estimate instantaneous phase and amplitude of EROs from delta to gamma frequency bands, while modulation index computed ERO phase-amplitude coupling (PAC) at electrode pairs. As compared to the HC and PD groups, the PDMCI group was characterized by (1) more posterior topography of the delta-theta PAC and (2) reversed delta-low frequency alpha PAC direction, ie, posterior-to-anterior rather than anterior-to-posterior. These results suggest that during cognitive demands, PDMCI patients are characterized by abnormal neurophysiological oscillatory mechanisms mainly led by delta frequencies underpinning functional connectivity from frontal to parietal cortical areas.Article Citation - WoS: 5Citation - Scopus: 6Achieving Turkey's Indc Target: Assessments of Nccap and Indc Documents and Proposing Conceivable Policies(Mdpi, 2018) Alkan, Ayla; Oğuş Binatlı, Ayla; Deger, CagacanIn 2015, Turkey submitted its Intended Nationally Determined Contribution (INDC) to the United Nations Framework on Climate Change Convention (UNFCCC) before the Paris Conference of the Parties (COP 21), expressing its intention to decrease emissions level at a rate of 21% from business as usual. This emissions reduction target is important as it is the first one for Turkey. However, Turkey faces unemployment problems and needs to sustain its growth. In this study, an Environmentally Extended Social Accounting Matrix (SAM), based on 2012 Input-Output data, was created, emissions reduction potentials of the National Climate Change Action Plan (NCCAP) together with the INDC were calculated, and alternative policies to reduce emissions to the target level and to boost the economy were proposed separately. The study finds that both the preparation and implementation of the previous national documents are problematic, and that Turkey was not meticulous about implementation of the climate mitigation policies in the previous national documents. The study also finds that reaching the emissions target with the INDC policies seems impossible and more conceivable policies are needed, and recommends that the INDC target and document itself should be revised substantially.Article Citation - WoS: 2Citation - Scopus: 2Active Vibration Control of Cantilever Structures by Integrating the Closed Loop Control Action Into Transient Solution of Finite Element Model and an Application To Aircraft Wing(Mdpi, 2025) Bulbul, Ilker; Akdag, Murat; Karagulle, HiraIn this study, the active vibration control (AVC) of a cantilever beam with an end mass is considered first and studied experimentally and through simulation. The Laplace transform method, Newmark method, and ANSYS are used for simulations. An impulse force applied to the mass and the velocity actuation applied to the base are assumed to be disturbance and controlling input, respectively. The displacement of the mass is taken as the feedback signal in simulations. Four strain gauges are located near the bottom point, connected with a Wheatstone bridge, and the output voltage of a load-cell amplifier (LCA) is used as the feedback signal in experiments. Strain feedback is considered in experiments because it is easy to implement, cost-effective, and can be used in applications. Experimental displacement signals obtained from the top of the beam are compared with the output signals from LCA and it is observed that they are approximately linearly dependent. Velocity input is generated with a servo motor-driven linear actuator in experiments. The closed loop control is achieved by a personal computer with an Adlink-9222 PCI DAQ card and a C program in the experiments. The integration of the closed loop control action into the transient solution with Newmark method and ANSYS is implemented in simulations. The input reference value is taken as zero for vibration control. The instantaneous value of the feedback signal at a time step is subtracted from zero to find the error signal value and the error value is multiplied by the control gain to calculate the controlling signal. The simulation results obtained with the Newmark method and ANSYS are in good agreement with the analytical results obtained with Laplace transform method. Simulation results are also in acceptable agreement with the experimental results for explaining the behavior of the success of AVC depending on the control gain, Kp. After verifying ANSYS solutions, the ANSYS procedure is applied to an aircraft wing as a real complex cantilever structure. The wing, with a length of 810.8 mm, 13 ribs with a length of 300 mm, and NACA 4412 airfoil, is considered in this study. It is observed that the AVC of real engineering structures can be simulated by integrating control action into transient solution in ANSYS.Article Citation - WoS: 5Citation - Scopus: 6Adaptation of Quality of Life Measure for Limb Lymphedema-Arm in Turkish Women With Breast Cancer-Related Lymphedema(Lippincott Williams & Wilkins, 2021) Karayurt, Ozgul; Deveci, Zeynep; Eyigor, Sibel; Inbat, Menekse OzgurBackground Quality-of-life measures are needed for clinicians and researchers to identify quality of women's life with breast cancer-related lymphedema (BCRL). Objective To adapt Quality of Life Measure for Limb Lymphedema-Arm into Turkish (TR) and to test its validity and reliability. Methods This is a methodological and cross-sectional study and was conducted in the lymphedema outpatient clinic of a university hospital. The study included 109 women with BCRL. After linguistic validity of the scale was achieved, confirmatory factor analyses and known group validity were used to test its construct validity. Reliability of the scale was tested with Cronbach's alpha, item-total correlations, and Spearman-Brown coefficient. Results After linguistic validity was achieved, opinions requested from 5 experts specializing in lymphedema showed that item and content validity indexes of the scale were 1. Fit indexes of confirmatory factor analysis were as follows: chi(2)/df = 1.86, root mean square error of approximation = 0.089, standardized root mean square residual = 0.09, and comparative fit index = 0.81. Known group validity analysis showed a significant difference in the mean scores for the subscales of Quality of Life Measure for Limb Lymphedema-Arm-TR, symptom, function, and body image/appearance in terms of lymphedema stages (P < .05). The internal reliability coefficients for the subscales ranged from 0.78 and 0.86. The item-total correlation coefficients ranged between 0.36 and 0.73. Conclusion Quality of Life Measure for Limb Lymphedema-Arm-TR was found to be valid and reliable in the TR population. It could be used in research to evaluate the quality of life in patients with BCRL. Implications for Practice The scale can be used to evaluate effectiveness of nursing interventions directed toward patients developing breast cancer-related lymphedema in clinical settings and studies.Conference Object Citation - WoS: 61Citation - Scopus: 69Adaptation To Five Metres of Sea Level Rise(Routledge Journals, Taylor & Francis Ltd, 2006) Tol, Richard S. J.; Bohn, Maria; Downing, Thomas E.; Guillerminet, Marie-Laure; Hizsnyik, Eva; Kasperson, Roger; Lonsdale, KateThere is an unknown but probably small probability that the West-Antarctic Ice Sheet (WAIS) will collapse because of anthropogenic climate change. A WAIS collapse could cause a 5-6 metre global sea level rise within centuries. In three case studies, we investigate the response of society to the most extreme yet not implausible scenario, a five-metre sea level rise within a century, starting in 2030. The case studies combine a series of interviews with experts and stakeholders with a gaming workshop. In the Rhone delta, the most likely option would be retreat, with economic losses, perhaps social losses, and maybe ecological gains. In the Thames estuary, the probable outcome is less clear, but would probably be a mix of protection, accommodation and retreat, with parts of the city centre turned into a Venice of London. A massive downstream barrier is an alternative response. In the Rhine delta (the Netherlands), the initial response would be protection, followed by retreat from the economically less important parts of the country and, probably, from Amsterdam Rotterdam metropolitan region as well. These impacts are large compared to other climate change impacts, but probably small compared to the impacts of the same scenario in other parts of the world. This suggests that the possibility of a anthropogenic-climate-change-induced WAIS collapse would strengthen the case for greenhouse gas emission reduction.Article Citation - WoS: 14Citation - Scopus: 18Adaptive Controller Based on Grid Impedance Estimation for Stable Operation of Grid-Connected Inverters Under Weak Grid Conditions(Inst Engineering Technology-Iet, 2020) Temiz, Hakan; Keysan, Ozan; Demirok, ErhanAn electric grid having high impedance seen from the connection point is considered as a weak grid and it adversely affects the system stability of grid-tied voltage source inverters in renewable power devices. In this study, an adaptive controller is proposed by configuring the settling time of the phase-locked loop based on the estimated grid impedance. Pseudorandom binary sequence injection and Fourier techniques are carried out for grid impedance estimation. Impedance-based stability analysis is performed for a predetermined steady-state operation point. The proposed method is verified by a 300-kVA inverter prototype for wide-range grid impedance varying from 0.3 to 3 mH.Article Citation - WoS: 7Citation - Scopus: 9Adults' Visual Cue Preferences and Wayfinding Abilities in Healthcare Centers(Sage Publications Inc, 2023) Asli, Afsaneh Alizadeh; Moshfeghifar, Samaneh; Mousighichi, Pouya; Samimi, Paniz MousaviObjectives: Physical and visual elements that help people find their way around an environment are called visual cues (VCs). The current study aims to evaluate adults' wayfinding abilities (navigation, orientation, spatial anxiety, and distance estimation) and VC (navigational color coding) preferences in terms of color and position; additionally, investigates their differences in adults' life span phases (young adults, early middle-aged adults, and late middle-aged adults). Background: Wayfinding in complex environments such as healthcare centers has been challenging for most people. Although VCs are being used increasingly to facilitate wayfinding, considering people's preferences regarding VCs, especially navigational color coding, are neglected. Methods: Obtained data from a survey of 375 healthcare center visitors with textual and photo questionnaires were analyzed by descriptive statics and one-way analysis of variance. Results: Young adults preferred VCs with mixed colors and positioned in the middle of the floor, early middle-aged adults preferred warm color VCs in the middle of the wall, and late middle-aged adults preferred warm color VCs at the bottom of the wall. Additionally, the results demonstrated that with aging, navigation and distance estimation abilities deteriorate, and spatial anxiety increases. Conclusions: The outcomes of the present study increase our knowledge regarding the impact of adults' life span phases on their wayfinding abilities and VC preferences and offer suggestions for architects and healthcare center stakeholders to provide environments that improve adults' wayfinding.Review Article The Afterlife of Critique: The Communicability of Criticism and the Publicity of Polemic Concerning Public Debate in the Turkish Press(Usc Annenberg Press, 2017) Gürsoy, A. Özgür; Karanfil, Y GökçenThe philosophical activity of critique is intimately connected with the mundane activity of public criticism that takes place in newspapers. Drawing on the Kantian tradition of critical philosophy, we argue that four axes, namely, self-examination, liminal interrogation, concern with legitimacy, and the requirement of communicability, are implied by critical discourse and public debate. We then examine a recent set of polemics (between Doan Akin, Ali BayramoOlu, and Etyen Mahgupyan) in the Turkish press with the aid of these axes as well as techniques for the analysis of informal reasoning to determine what critical function such polemics may have. We conclude that critique survives as polemic in the Turkish press, but in such a way that the latter's publicity vitiates the former's communicability. The result is that polemics ultimately track the balance of power between social forces rather than being a transformative element within them.Article Citation - WoS: 7Citation - Scopus: 8Ag-Intercalation of Tm3+/Er3+ Co-Doped Layered Perovskites and Their Exfoliated 2d Nanosheets With an Enhanced Antibiofilm and Antibacterial Activity(Elsevier, 2022) Gunay, Bensu; Doger, Hilal; Karagonlar, Zeynep Firtina; Saglam, OzgeThere is a significant demand for antibiofilm and antimicrobial materials in the medical device industry. It is well established that Ag-based compounds have a high antimicrobial efficiency. Without being in a lattice, silver's antimicrobial action is mainly mediated by the release of Ag+ ions from the compound. These ions at high levels are toxic to most bacterial species. However, rapidly released Ag+ ions tend to aggregate and lose their anti-bacterial effect over time. Thus, utilizing a new approach for using silver as an antimicrobial agent based on imparting the antimicrobial action through contact, rather than releasing Ag+ ions could be beneficial. Here we report that Ag+ ions intercalation of Tm/Er co-doped layered perovskites and their 2D nanosheets exhibit antibacterial and antibiofilm activities against the human opportunistic pathogens Escherichia coli and Bacillus subtilis. Specifically, flocculation of nanosheets with Ag+ ions had efficient antibacterial and antibiofilm activity at 100 mu g/mL. In addition, the flocculated product demonstrated low in vitro cytotoxicity against the Huh7 hepatocellular carcinoma cell line and HEK 293 embryonic kidney cell line. Our results indicate that Ag-intercalated layered perovskites and the flocculation of the nanosheets hold great promise to be used for anti-microbial and antibiofilm purposes in biomedical engineering applications.Article Against Ahistorical Liberalism: the Importance of Acknowledging Past Injustices(MDPI, 2025) Ozyurt, Deniz OzbekLiberal political philosophy has traditionally maintained that history is irrelevant to justice, focusing instead on the present and the future. This perspective renders liberalism largely indifferent to historical injustices, as it prioritizes abstract principles of fairness over considerations of past wrongs. However, contemporary liberal thinkers have increasingly challenged this ahistorical stance, advocating for an approach that acknowledges historical injustices and their enduring effects. This article examines this theoretical debate, emphasizing the importance of remembrance in political philosophy.Article Citation - WoS: 3Citation - Scopus: 5Agar-Based Adaptable Diy Materials(Univ Belgrade, Fac Mechanical Engineering, 2019) Zuberi, Hajra S.; Bengisu, MuratSeveral types of agar-based polymeric materials were developed for the use of designers, engineers, makers, and do-it-yourself (DIY) enthusiasts. Simple recipes and procedures were determined for the adaptation and use by anyone who is interested to use sustainable, non-toxic, and even edible plastic-like materials without the need for a scientific background. The recipes and procedures were developed by controlled laboratory experiments. The main recipes contain different combinations of agar strips, water, glycerine, and vinegar. A variety of films with different sensorial properties (soft, hard, flexible, stiff clear, coloured, textured, with or without spicy odour, etc.) were prepared by heating the ingredients in a saucepan, mixing, pouring on a flat surface, and drying for a few days. These were evaluated by tinkering and user studies that involved students from design, food engineering, culinary arts, and other fields. Based on these studies, several applications were suggested for product, fashion, service, and food design.Conference Object Age-Related Alterions in Theta and Alpha Oscillations During Perceptual Reversals(Elsevier, 2021) Küçük, Kurtulus Mert; Mathes, Birgit; Başar Eroğlu, Canan[Abstract Not Available]

