Robust Activation Detection Methods for Real-Time and Offline Fmri Analysis

dc.contributor.author Oguz, Kaya
dc.contributor.author Cinsdikici, Muhammed G.
dc.contributor.author Gonul, Ali Saffet
dc.date.accessioned 2023-06-16T12:59:06Z
dc.date.available 2023-06-16T12:59:06Z
dc.date.issued 2017
dc.description.abstract We propose two contributions with novel approaches to fMRI activation analysis. The first is to apply confidence intervals to locate activations in real-time, and second is a new metric based on robust regression of fMRI signals. These contributions are implemented in our four proposed methods; Instantaneous Activation Method (TAM), Instantaneous Activation Method with Past Blocks (TAMP) for real-time analysis, Task Robust Regression Distance Method (TRRD) for the new metric with robust regression and Instantaneous Robust Regression Distance Method (IRRD) for both contributions. For comparison, a statistical offline method called Task Activation Method (TAM) and a correlation analysis method are also implemented. The methods are initially evaluated with synthetic data generated using two different approaches; first using varying hemodynamic response function signals to simulate a wide range of stimuli responses, along with a Gaussian white noise, and second using no activity state data of a real fMRI experiment, which removes the need to generate noise. The methods are also tested with real fMRI experiments and compared with the results obtained by the widely used SPM tool. The results show that instantaneous methods reveal activations that are lost statistically in an offline analysis. They also reveal further improvements by robust fitting application, which minimizes the outlier effect. TRRD has an area under the ROC curve of 0,7127 for very noisy synthetic images, is reaching up to 0,9608 as the noise decreases, while the instantaneous score is in the range of 0,6124 to 0,8019 in the same noise levels. (C) 2017 Elsevier B.V. All rights reserved. en_US
dc.description.sponsorship TUBITAK, 1001 Project [214S029] en_US
dc.description.sponsorship This work is partly funded by TUBITAK, 1001 Project Number 214S029, titled The comparison of neural components related with default mode, short-term memory store and recall of subjects diagnosed with mild cognitive impairment with early Alzheimer's Disease and their healthy siblings and controls. en_US
dc.identifier.doi 10.1016/j.cmpb.2017.03.015
dc.identifier.issn 0169-2607
dc.identifier.issn 1872-7565
dc.identifier.scopus 2-s2.0-85015700542
dc.identifier.uri https://doi.org/10.1016/j.cmpb.2017.03.015
dc.identifier.uri https://hdl.handle.net/20.500.14365/1133
dc.language.iso en en_US
dc.publisher Elsevier Ireland Ltd en_US
dc.relation.ispartof Computer Methods And Programs in Bıomedıcıne en_US
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.subject fMRI en_US
dc.subject Activation estimation en_US
dc.subject Robust regression en_US
dc.subject Instantaneous activation en_US
dc.subject Real-time fMRI en_US
dc.subject Functional Mri en_US
dc.subject Brain en_US
dc.subject Optimization en_US
dc.subject Noise en_US
dc.title Robust Activation Detection Methods for Real-Time and Offline Fmri Analysis en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.id Gökhan, Muhammet Gökhan/0000-0001-6420-7586
gdc.author.id Oguz, Kaya/0000-0002-1860-9127
gdc.author.scopusid 54902980200
gdc.author.scopusid 22733519100
gdc.author.scopusid 55942313100
gdc.author.wosid Gönül, Ali Saffet/Z-3031-2019
gdc.author.wosid Gökhan, Muhammet Gökhan/L-2911-2013
gdc.author.wosid Oguz, Kaya/A-1812-2016
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gdc.description.department İEÜ, Mühendislik Fakültesi, Bilgisayar Mühendisliği Bölümü en_US
gdc.description.departmenttemp [Oguz, Kaya] Izmir Univ Econ, Dept Comp Engn, TR-35330 Izmir, Turkey; [Cinsdikici, Muhammed G.] Ege Univ, Int Comp Inst, TR-35100 Izmir, Turkey; [Gonul, Ali Saffet] Ege Univ, Dept Psychiat, Sch Med, TR-35100 Izmir, Turkey en_US
gdc.description.endpage 11 en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q1
gdc.description.startpage 1 en_US
gdc.description.volume 144 en_US
gdc.description.wosquality Q1
gdc.identifier.openalex W2596084109
gdc.identifier.pmid 28494993
gdc.identifier.wos WOS:000402214800002
gdc.index.type WoS
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gdc.index.type PubMed
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gdc.oaire.keywords Brain Mapping
gdc.oaire.keywords Activation estimation
gdc.oaire.keywords fMRI
gdc.oaire.keywords Normal Distribution
gdc.oaire.keywords Brain
gdc.oaire.keywords Instantaneous activation
gdc.oaire.keywords Magnetic Resonance Imaging
gdc.oaire.keywords ROC Curve
gdc.oaire.keywords Image Interpretation, Computer-Assisted
gdc.oaire.keywords Real-time fMRI
gdc.oaire.keywords Humans
gdc.oaire.keywords Regression Analysis
gdc.oaire.keywords Computer Simulation
gdc.oaire.keywords Robust regression
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gdc.oaire.sciencefields 03 medical and health sciences
gdc.oaire.sciencefields 0302 clinical medicine
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gdc.virtual.author Oğuz, Kaya
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