Proteolysis of Micellar Beta-Casein by Trypsin: Secondary Structure Characterization and Kinetic Modeling at Different Enzyme Concentrations

dc.contributor.author Vorob'ev, Mikhail M.
dc.contributor.author Acikgoez, Burcin Dersu
dc.contributor.author Gueler, Guennur
dc.contributor.author Golovanov, Andrey V.
dc.contributor.author Sinitsyna, Olga V.
dc.date.accessioned 2023-06-16T14:41:01Z
dc.date.available 2023-06-16T14:41:01Z
dc.date.issued 2023
dc.description.abstract Tryptic proteolysis of protein micelles was studied using beta-casein (beta-CN) as an example. Hydrolysis of specific peptide bonds in beta-CN leads to the degradation and rearrangement of the original micelles and the formation of new nanoparticles from their fragments. Samples of these nanoparticles dried on a mica surface were characterized by atomic force microscopy (AFM) when the proteolytic reaction had been stopped by tryptic inhibitor or by heating. The changes in the content of beta-sheets, alpha-helices, and hydrolysis products during proteolysis were estimated by using Fourier-transform infrared (FTIR) spectroscopy. In the current study, a simple kinetic model with three successive stages is proposed to predict the rearrangement of nanoparticles and the formation of proteolysis products, as well as changes in the secondary structure during proteolysis at various enzyme concentrations. The model determines for which steps the rate constants are proportional to the enzyme concentration, and in which intermediate nano-components the protein secondary structure is retained and in which it is reduced. The model predictions were in agreement with the FTIR results for tryptic hydrolysis of beta-CN at different concentrations of the enzyme. en_US
dc.description.sponsorship RFBR; Ministry of Science and Higher Education of the Russian Federation [119N423]; Scientific and Technological Research Council of Turkey; [075-03-2023-642]; [20-53-46006]; [TUEBITAK-2532] en_US
dc.description.sponsorship This work was supported by both RFBR (? 20-53-46006 to M.M. Vorobev) and TUEBITAK-2532 (? 119N423 to G. Gueler). The work of the Russian team was supported by the Ministry of Science and Higher Education of the Russian Federation (Contract No. 075-03-2023-642). The work of the Turkish team was supported by The Scientific and Technological Research Council of Turkey. en_US
dc.identifier.doi 10.3390/ijms24043874
dc.identifier.issn 1422-0067
dc.identifier.scopus 2-s2.0-85149028561
dc.identifier.uri https://doi.org/10.3390/ijms24043874
dc.identifier.uri https://hdl.handle.net/20.500.14365/2535
dc.language.iso en en_US
dc.publisher Mdpi en_US
dc.relation.ispartof Internatıonal Journal of Molecular Scıences en_US
dc.rights info:eu-repo/semantics/openAccess en_US
dc.subject proteolysis kinetics en_US
dc.subject Fourier-transform infrared spectroscopy en_US
dc.subject atomic force microscopy en_US
dc.subject beta-casein en_US
dc.subject trypsin en_US
dc.subject Infrared Ft-Ir en_US
dc.subject Tryptic Hydrolysis en_US
dc.subject Spectroscopy en_US
dc.subject Demasking en_US
dc.subject Protease en_US
dc.subject Milk en_US
dc.subject Site en_US
dc.title Proteolysis of Micellar Beta-Casein by Trypsin: Secondary Structure Characterization and Kinetic Modeling at Different Enzyme Concentrations en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.id Vorob'ev, Mikhail/0000-0003-1312-7599
gdc.author.scopusid 58119873500
gdc.author.scopusid 58120431700
gdc.author.scopusid 37010966300
gdc.author.scopusid 58120101200
gdc.author.scopusid 57214806810
gdc.author.wosid Vorob'ev, Mikhail/R-9107-2016
gdc.bip.impulseclass C4
gdc.bip.influenceclass C5
gdc.bip.popularityclass C4
gdc.coar.access open access
gdc.coar.type text::journal::journal article
gdc.collaboration.industrial false
gdc.description.department İzmir Ekonomi Üniversitesi en_US
gdc.description.departmenttemp [Vorob'ev, Mikhail M.; Golovanov, Andrey V.; Sinitsyna, Olga V.] RAS, AN Nesmeyanov Inst Organoelement Cpds, 28 ul Vavilova, Moscow 119991, Russia; [Acikgoez, Burcin Dersu] Izmir Univ Econ, Grad Sch, Div Bioengn, TR-35330 Izmir, Turkiye; [Gueler, Guennur] Izmir Inst Technol, Dept Phys, Biophys Lab, TR-35430 Izmir, Turkiye; [Gueler, Guennur] Izmir Univ Econ, Biomed Bioengn, Sakarya Cad, TR-35330 Izmir, Turkiye en_US
gdc.description.issue 4 en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q2
gdc.description.volume 24 en_US
gdc.description.wosquality Q1
gdc.identifier.openalex W4320920261
gdc.identifier.pmid 36835285
gdc.identifier.wos WOS:000939019400001
gdc.index.type WoS
gdc.index.type Scopus
gdc.index.type PubMed
gdc.oaire.accesstype GOLD
gdc.oaire.diamondjournal false
gdc.oaire.impulse 10.0
gdc.oaire.influence 2.779268E-9
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gdc.oaire.keywords atomic force microscopy
gdc.oaire.keywords Hydrolysis
gdc.oaire.keywords Fourier-transform infrared spectroscopy
gdc.oaire.keywords Caseins
gdc.oaire.keywords beta-casein
gdc.oaire.keywords Article
gdc.oaire.keywords trypsin
gdc.oaire.keywords Kinetics
gdc.oaire.keywords Proteolysis
gdc.oaire.keywords Trypsin
gdc.oaire.keywords proteolysis kinetics
gdc.oaire.keywords Micelles
gdc.oaire.popularity 9.538294E-9
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gdc.oaire.sciencefields 0106 biological sciences
gdc.oaire.sciencefields 04 agricultural and veterinary sciences
gdc.oaire.sciencefields 01 natural sciences
gdc.oaire.sciencefields 0404 agricultural biotechnology
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gdc.opencitations.count 4
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gdc.plumx.mendeley 20
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