A Simple and Efficient "Cell in Situ Collagen Zymography" Technique To Evaluate Cellular Collagenase Activities in Thyroid Cancer Cell Lines

dc.contributor.author Savas, Ege Gokce
dc.contributor.author Surer, Seniz Inanc
dc.contributor.author Sipahi, Murat
dc.contributor.author Keles, Didem
dc.contributor.author Oktay, Gulgun
dc.date.accessioned 2025-01-25T17:04:15Z
dc.date.available 2025-01-25T17:04:15Z
dc.date.issued 2025
dc.description.abstract BackgroundCollagenases, a subgroup of matrix metalloproteinases (MMPs), play crucial roles in local invasion and metastasis in cancer. While substrate zymography and in situ zymography are commonly used to analyze the collagenases, traditional techniques have limitations in determining their local activities in vitro.ObjectivesWe aimed to develop a new "cell in situ collagen zymography" technique to enhance the efficiency of studying local collagenase activities in vitro.MethodsWe utilized human thyroid cancer cell lines (8505 C, B-CPAP, FTC-133) and normal follicular thyroid cell line (Nhty-ori-3-1). We compared collagenase levels across these cell lines and selected 8505 C as a model due to its highest collagenase activity. We optimized factors including (i) fixation method (methanol, ethanol and zinc), (ii) dye-quenched (DQ) collagen concentration and (iii) collagen gel configuration. For gel configuration, cells were seeded under, on the top of, or between (sandwich) collagen gel layers. As controls, enzymatic activity was suppressed in the presence of EDTA, piroxicam and matrix metalloproteinase 8 inhibitor I. The optimized method was also applied to BCPAP, FTC-133, and Nthy-ori-3-1.ResultsOur optimization process revealed that that the best visualization of collagenase activity in 8505 C was provided by the "sandwich model" of gel, containing 25 mu g/mL of DQ-collagen with 100% cold methanol fixation. We confirmed the optimized method's applicability in other thyroid cell lines. The use of inhibitors validated the specificity of the fluorescent signal to MMP activity.ConclusionThe innovative "cell in situ collagen zymography" technique offers an efficient, cost-effective, and rapid method for analyzing local collagenase activities in vitro. en_US
dc.description.sponsorship Dokuz Eylul University Scientific Research Project Coordination Unit [5.16.1] en_US
dc.description.sponsorship Ege Gokce Savas drew the figures using Linearity Curve software (5.16.1). We appreciate Marcel Tisch for publicly sharing the 96-well plate, cells, and magnifier icons, through Bioicons open-source library, which were used in this work. en_US
dc.identifier.doi 10.1007/s11033-024-10158-8
dc.identifier.issn 0301-4851
dc.identifier.issn 1573-4978
dc.identifier.scopus 2-s2.0-85211912886
dc.identifier.uri https://doi.org/10.1007/s11033-024-10158-8
dc.identifier.uri https://hdl.handle.net/20.500.14365/5783
dc.language.iso en en_US
dc.publisher Springer en_US
dc.relation.ispartof Molecular Biology Reports
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.subject In Situ Zymography en_US
dc.subject Matrix Metalloproteinases en_US
dc.subject Collagenases en_US
dc.subject Gelatinases en_US
dc.subject Dq-Collagen en_US
dc.subject Thyroid Cancer en_US
dc.title A Simple and Efficient "Cell in Situ Collagen Zymography" Technique To Evaluate Cellular Collagenase Activities in Thyroid Cancer Cell Lines en_US
dc.type Article en_US
dspace.entity.type Publication
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gdc.author.wosid Keleş, Didem/F-1643-2016
gdc.author.wosid Inanc-Surer, Seniz/R-6431-2017
gdc.bip.impulseclass C5
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gdc.coar.access metadata only access
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gdc.description.department İzmir Ekonomi Üniversitesi en_US
gdc.description.departmenttemp [Savas, Ege Gokce] Dokuz Eylul Univ, Fac Sci, Dept Chem, TR-35390 Izmir, Turkiye; [Savas, Ege Gokce] Dokuz Eylul Univ, Izmir Int Biomed & Genome Inst, Dept Mol Biol & Genet, TR-35340 Izmir, Turkiye; [Surer, Seniz Inanc] Izmir Tinaztepe Univ, Vocat Sch Hlth Serv, Dept Med Lab Tech, TR-35400 Izmir, Turkiye; [Sipahi, Murat] Dokuz Eylul Univ, Inst Hlth Sci, Dept Med Biochem, TR-35340 Izmir, Turkiye; [Keles, Didem] Izmir Univ Econ, Vocat Sch Hlth Serv, Dept Med Lab Tech, TR-35330 Izmir, Turkiye; [Oktay, Gulgun] Dokuz Eylul Univ, Sch Med, Dept Med Biochem, TR-35340 Izmir, Turkiye en_US
gdc.description.issue 1 en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q3
gdc.description.volume 52 en_US
gdc.description.woscitationindex Science Citation Index Expanded
gdc.description.wosquality Q3
gdc.identifier.openalex W4405398362
gdc.identifier.pmid 39673649
gdc.identifier.wos WOS:001377251400001
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gdc.index.type PubMed
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gdc.oaire.impulse 0.0
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gdc.oaire.keywords Cell Line, Tumor
gdc.oaire.keywords Humans
gdc.oaire.keywords Thyroid Neoplasms
gdc.oaire.keywords Collagenases
gdc.oaire.keywords Collagen
gdc.oaire.keywords Enzyme Assays
gdc.oaire.popularity 2.3737945E-9
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gdc.virtual.author Keleş Bartık, Didem
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