Classification and Retrieval on Macroinvertebrate Image Databases

dc.contributor.author Kiranyaz, Serkan
dc.contributor.author İnce, Türker
dc.contributor.author Pulkkinen, Jenni
dc.contributor.author Gabbouj, Moncef
dc.contributor.author Arje, Johanna
dc.contributor.author Karkkainen, Salme
dc.contributor.author Tirronen, Ville
dc.date.accessioned 2023-06-16T12:59:08Z
dc.date.available 2023-06-16T12:59:08Z
dc.date.issued 2011
dc.description.abstract Aquatic ecosystems are continuously threatened by a growing number of human induced changes. Macroinvertebrate biomonitoring is particularly efficient in pinpointing the cause-effect structure between slow and subtle changes and their detrimental consequences in aquatic ecosystems. The greatest obstacle to implementing efficient biomonitoring is currently the cost-intensive human expert taxonomic identification of samples. While there is evidence that automated recognition techniques can match human taxa identification accuracy at greatly reduced costs, so far the development of automated identification techniques for aquatic organisms has been minimal. In this paper, we focus on advancing classification and data retrieval that are instrumental when processing large macroinvertebrate image datasets. To accomplish this for routine biomonitoring, in this paper we shall investigate the feasibility of automated river macroinvertebrate classification and retrieval with high precision. Besides the state-of-the-art classifiers such as Support Vector Machines (SVMs) and Bayesian Classifiers (BCs), the focus is particularly drawn on feed-forward artificial neural networks (ANNs), namely multilayer perceptrons (MLPs) and radial basis function networks (RBFNs). Since both ANN types have been proclaimed superior by different investigations even for the same benchmark problems, we shall first show that the main reason for this ambiguity lies in the static and rather poor comparison methodologies applied in most earlier works. Especially the most common drawback occurs due to the limited evaluation of the ANN performances over just one or few network architecture(s). Therefore, in this study, an extensive evaluation of each classifier performance over an ANN architecture space is performed. The best classifier among all, which is trained over a dataset of river macroinvertebrate specimens, is then used in the MUVIS framework for the efficient search and retrieval of particular macroinvertebrate peculiars. Classification and retrieval results present high accuracy and can match an experts' ability for taxonomic identification. (C) 2011 Elsevier Ltd. All rights reserved. en_US
dc.description.sponsorship Academy of Finland (Finnish Centre of Excellence) [213462]; COMAS graduate school; STATCORE (University Alliance Finland Research Cluster of Excellence) en_US
dc.description.sponsorship This work was supported by the Academy of Finland, Project no. 213462 (Finnish Centre of Excellence Program (2006-2011)).; Supported by the COMAS graduate school.; Supported by the STATCORE (University Alliance Finland Research Cluster of Excellence). en_US
dc.identifier.doi 10.1016/j.compbiomed.2011.04.008
dc.identifier.issn 0010-4825
dc.identifier.issn 1879-0534
dc.identifier.scopus 2-s2.0-84930188483
dc.identifier.uri https://doi.org/10.1016/j.compbiomed.2011.04.008
dc.identifier.uri https://hdl.handle.net/20.500.14365/1142
dc.language.iso en en_US
dc.publisher Pergamon-Elsevier Science Ltd en_US
dc.relation.ispartof Computers in Bıology And Medıcıne en_US
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.subject Biomonitoring en_US
dc.subject Classification en_US
dc.subject Radial basis function networks en_US
dc.subject Multilayer perceptrons en_US
dc.subject Bayesian Networks en_US
dc.subject Support Vector Machines en_US
dc.subject Benthic macroinvertebrate en_US
dc.subject Identification en_US
dc.subject Segmentation en_US
dc.subject Features en_US
dc.title Classification and Retrieval on Macroinvertebrate Image Databases en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.id Gabbouj, Moncef/0000-0002-9788-2323
gdc.author.id Arje, Johanna/0000-0003-0710-9044
gdc.author.id kiranyaz, serkan/0000-0003-1551-3397
gdc.author.id Raitoharju, Jenni/0000-0003-4631-9298
gdc.author.id İnce, Türker/0000-0002-8495-8958
gdc.author.id Meissner, Kristian/0000-0001-6316-8554
gdc.author.scopusid 7801632948
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gdc.author.scopusid 6601908750
gdc.author.scopusid 56021103800
gdc.author.scopusid 19639389400
gdc.author.wosid Gabbouj, Moncef/G-4293-2014
gdc.author.wosid Kiranyaz, Serkan/AAK-1416-2021
gdc.author.wosid Meissner, Kristian/E-8390-2014
gdc.bip.impulseclass C4
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gdc.coar.access metadata only access
gdc.coar.type text::journal::journal article
gdc.collaboration.industrial false
gdc.description.department İzmir Ekonomi Üniversitesi en_US
gdc.description.departmenttemp [Kiranyaz, Serkan; Pulkkinen, Jenni; Gabbouj, Moncef] Tampere Univ Technol, Dept Signal Proc, FIN-33101 Tampere, Finland; [İnce, Türker] Izmir Univ Econ, Fac Engn & Comp Sci, TR-35330 Izmir, Turkey; [Arje, Johanna; Karkkainen, Salme; Tirronen, Ville] 40014 Univ Jyvaskyla, FIN-40014 Jyvaskyla, Finland; [Juhola, Martti] Univ Tampere, Sch Informat Sci, Tampere 33014, Finland; [Turpeinen, Tuomas] Univ Jyvaskyla, Dept Phys, Jyvaskyla, Finland; [Meissner, Kristian] Finnish Environm Inst, Monitoring & Assessment Unit, Jyvaskyla, Finland en_US
gdc.description.endpage 472 en_US
gdc.description.issue 7 en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q1
gdc.description.startpage 463 en_US
gdc.description.volume 41 en_US
gdc.description.wosquality Q1
gdc.identifier.openalex W2002840041
gdc.identifier.pmid 21601841
gdc.identifier.wos WOS:000292950300006
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gdc.index.type PubMed
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gdc.oaire.keywords Nymph
gdc.oaire.keywords Aquatic Organisms
gdc.oaire.keywords Insecta
gdc.oaire.keywords Databases, Factual
gdc.oaire.keywords ta1172
gdc.oaire.keywords 333
gdc.oaire.keywords Rivers
gdc.oaire.keywords Support Vector Machines
gdc.oaire.keywords Image Processing, Computer-Assisted
gdc.oaire.keywords Animals
gdc.oaire.keywords Multilayer perceptrons
gdc.oaire.keywords Ecosystem
gdc.oaire.keywords ta113
gdc.oaire.keywords Benthic macroinvertebrate
gdc.oaire.keywords ta112
gdc.oaire.keywords ta213
gdc.oaire.keywords Bayes Theorem
gdc.oaire.keywords Classification
gdc.oaire.keywords Radial basis function networks
gdc.oaire.keywords 004
gdc.oaire.keywords Biomonitoring
gdc.oaire.keywords Bayesian Networks
gdc.oaire.keywords Neural Networks, Computer
gdc.oaire.keywords Algorithms
gdc.oaire.keywords Environmental Monitoring
gdc.oaire.popularity 1.1016805E-8
gdc.oaire.publicfunded false
gdc.oaire.sciencefields 02 engineering and technology
gdc.oaire.sciencefields 03 medical and health sciences
gdc.oaire.sciencefields 0302 clinical medicine
gdc.oaire.sciencefields 0202 electrical engineering, electronic engineering, information engineering
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gdc.opencitations.count 35
gdc.plumx.crossrefcites 35
gdc.plumx.mendeley 42
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gdc.plumx.scopuscites 37
gdc.scopus.citedcount 37
gdc.virtual.author İnce, Türker
gdc.wos.citedcount 33
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