| Issue Date | Title | Author(s) |
| 2017 | 3D dendritic spine segmentation using nonparametric shape priors | Bocugoz E.; Erdil E.; Argunsah A.O.; Unay D. ; Cetin M. |
| 2020 | Accurate Dictionary Matching for MR Fingerprinting Using Neural Networks and Feature Extraction | Soyak R.; Ersoy E.O.; Navruz E.; Fakultesi M.; Unay D. ; Oksuz I. |
| 2021 | APAL: Adjacency Propagation Algorithm for overlapping community detection in biological networks | Doluca, Osman ; Oguz, Kaya |
| 2022 | An Assessment of Linear and Nonlinear Features for Detecting Olfactory Stimulus in EEG | Akbugday, Burak ; Akan, Aydin ; Pehlivan, Sude ; Sadighzadeh, Reza |
| 2022 | Autophagy-related genes affect the survival of multiple myeloma patients depending on chromosomal abnormality | Ayna Duran, Gizem ; Benderli Cihan, Yasemin |
| 2018 | Blockchain applications in healthcare | Ekin A. ; Unay D. |
| 2020 | Brief Fine Polishing of Thin-film Gold Electrode Sensors Leads to Better Reproducibility than Electrochemical Pretreatment | Kilic, Yalin ; Manickham, Pandiaraj; Bhansali, Shekhar |
| 2018 | A carboxylate-bridged Mn(II) compound with 6-methylanthranilate/bipy: oxidation of alcohols/alkenes and catalase-like activity | Kilic, Yalcin ; Bolat, Serkan ; Kani, Ibrahim |
| 2019 | Cell Segmentation of 2D Phase-Contrast Microscopy Images with Deep Learning Method | Ayanzadeh, Aydin; Yagar, Huseyin Onur; Ozuysal, Ozden Yalcin; Okvur, Devrim Pesen; Toreyin, Behcet Ugur; Unay, Devrim ; Onal, Sevgi |
| 2022 | Channel Attention Networks for Robust MR Fingerprint Matching | Soyak, Refik; Navruz, Ebru; Ersoy, Eda Ozgu; Cruz, Gastao; Prieto, Claudia; King, Andrew P.; Unay, Devrim |
| 2023 | Characterization of cisplatin loaded hydrophilic glycol chitosan modified eumelanin nanoparticles for potential controlled-release application | Atik, Aleyna; Günal, Tuğce; Acar Bozkurt, Pınar; Kose, Sila Naz ; Alp, Burcak ; Yandım, Cihangir ; Kaleli, Nurettin Mete |
| 2023 | Combinations of EEG Topographic Feature Maps for the Classification of ADHD | Pehlivan, Sude ; Akdemir, Onur; Cura, O.K.; Akbuğday, Burak ; Akan, Aydın |
| 2019 | Combining nonparametric spatial context priors with nonparametric shape priors for dendritic spine segmentation in 2-photon microscopy images | Erdil E.; Ozgurargunsah A.; Tasdizen T.; Unay D. ; Cetin M. |
| 2022 | Comparing the significance of the utilization of next generation and third generation sequencing technologies in microbial metagenomics | Akacin, Ilayda; Ersoy, Şeymanur; Doluca, Osman ; Gungormusler, Mine |
| 2021 | A comprehensive drug repurposing study for COVID19 treatment: novel putative dihydroorotate dehydrogenase inhibitors show association to serotonin-dopamine receptors | Berber, Burak; Doluca, Osman |
| 2016 | Consistent estimation of complete neuronal connectivity in large neuronal populations using sparse shotgun neuronal activity sampling | Mishchenko, Yuriy |
| 2021 | Coronavirus disease 2019 (COVID-19): Biophysical and biochemical aspects of SARS-CoV-2 and general characteristics | Guler, Gunnur ; Ozdemir, Helin; Omar, Dilara; Akdogan, Gul |
| 2017 | Coupled shape priors for dynamic segmentation of dendritic spines | Atabakilachini N.; Erdil E.; Argunsah A.O.; Rada L.; Unay D. ; Cetin M. |
| 2017 | Crosslinking of poly(vinyl alcohol) nanofibres with polycarboxylic acids: biocompatibility with human skin keratinocyte cells | Cay, Ahmet; Kumbasar, E. Perrin Akcakoca; Keskin, Zalike ; Akduman, Cigdem; Urkmez, Aylin Sendemir |
| 2018 | Daha verimli noninvaziv beyin makine arayüzlerinin geliştirilmesi | Kaya, Murat; Yanar, Hilmi; Özbay, Erkan; Sürmeli, Umut; Sağlam, Emre; Mishchenko, Yuriy ; Yılmaz, Zehra |
| 2017 | Dark matter phenomenology of high-speed galaxy cluster collisions | Mishchenko, Yuriy ; Ji, Chueng-Ryong |
| 2019 | Deep learning based melanoma detection from dermoscopic images | Berkay M.; Mergen E.H.; Binici R.C.; Bayhan Y.; Gungor A.; Okur E.; Unay D. |
| 2020 | Demonstration of G-quadruplex-assisted hybridization chain reaction for nucleic acid detection | Kanat B.; Portakal, Hüseyin Saygın ; Doluca, Osman |
| 2016 | Dendritic spine classification based on two-photon microscopic images using sparse representation | Ghani M.U.; Kanik S.D.; Argunşah A.O.; Israely I.; Ünay D. ; Çetin M. |
| 2017 | Dendritic spine classification using shape and appearance features based on two-photon microscopy | Ghani, Muhammad Usman; Mesadi, Fitsum; Kanik, Sumeyra Demir; Argunsah, Ali Oezguer; Hobbiss, Anna Felicity; Israely, Inbal; Unay, Devrim |
| 2016 | DENDRITIC SPINE SHAPE ANALYSIS USING DISJUNCTIVE NORMAL SHAPE MODELS | Ghani, Muhammad Usman; Mesadi, Fitsum; Kanik, Sumeyra Demir; Argunsah, Ali Ozgur; Israely, Inbal; Unay, Devrim ; Tasdizen, Tolga |
| 2016 | Dendritic spine shape analysis: A clustering perspective | Ghani M.U.; Erdil E.; Kanık S.D.; Argunşah A.Ö.; Hobbiss A.F.; Israely I.; Ünay D. |
| 2017 | Design of an Accessible, Powered Myoelectrically Controlled Hand Prosthesis | Akirmak, Osman Onur; Tatar, Cagdas; Altun, Ziya Gokalp; Mishchenko, Yuriy |
| 2023 | Detection of Attention Deficit Hyperactivity Disorder by Using EEG Feature Maps and Deep Learning | Akbuğday, Burak ; Bozbas, O. A.; Cura, O.K.; Pehlivan, Sude ; Akan, Aydın |
| 2023 | Determination of Eight Hub Genes and Functional Pathways Affecting both the Survival of Early- and Late-Stage Colon Cancer Patients | Ayna Duran, Gizem ; Sert, Fatma |
| 2019 | Developing a Three- to Six-State EEG-Based Brain-Computer Interface for a Virtual Robotic Manipulator Control | Mishchenko, Yuriy ; Kaya, Murat; Ozbay, Erkan; Yanar, Hilmi |
| 2019 | Distinguishing mental attention states of humans via an EEG-based passive BCI using machine learning methods | Aci, Cigdem Ivan; Kaya, Murat; Mishchenko, Yuriy |
| 2020 | The effect of extracellular matrix on the differentiation of mouse embryonic stem cells | Özdil, Berrin; Guler, Gunnur ; Acikgoz, Eda; Kocaturk, Duygu Calik; Aktug, Huseyin |
| 2020 | Effect of Flavopiridol on Cell Cycle, Apoptosis and Biomolecule Structure Changes in Breast Cancer Stem Cells | Acikgoz, Eda; Guler, Gunnur ; Oktem, Gulperi |
| 2020 | Elektroensefalografi Beyin-Makine Arayüzlerin Modellemesi | Mishchenko, Yuriy ; Yıldız, Zehra |
| 2022 | Enhancing Two-Photon Images for Anatomical Visualisation using Super-Resolution | Aydeniz, Burhan; Metin, Safa Can; Turkan, Mehmet ; Unay, Devrim ; Karayannis, Theofanis; Argunsah, Ali Ozgur |
| 2023 | Evaluation of lateral flow and ELISA techniques for detecting IgG and IgM antibodies in COVID-19 cases in Turkiye | Arikan, Ayse; Doluca, Osman ; Akhan, Sila; Sanlidag, Tamer; Sayan, Murat |
| 2018 | An Evaluation on the Robustness of Five Popular Keypoint Descriptors to Image Modifications Specific to Laser Scanning Microscopy | Unay, Devrim ; Stanciu, Stefan G. |
| 2023 | Exploring PI3K Pathway Inhibitors for Acute Myeloid Leukemia: A Drug-Repurposing Approach | Ergun, C.; Kiremitci, B.Z.; Arslantas, G.; Bozkurt, B.; Ayna Duran, Gizem ; Kiraz Durmaz, Yağmur |
| 2022 | Extending APAL to Detect Overlapping Communities in Weighted Networks | Oğuz, Kaya ; Doluca, Osman |
| 2021 | Fluorene/fluorenone carboxamide derivatives as selective light-up fluorophores for c-myc G-quadruplex | Duyar, Halil; Portakal, Hüseyin Saygın ; Yalcin, Ergin; Kanat, Beyza; Doluca, Osman ; Seferoglu, Zeynel |
| 2021 | Fluorescence, UV-Vis and Molecular Docking Studies on Trastuzumab-Ligand Interactions | Kaptan, Altan; Pacali, Nilufer; Hurma, Yaren; Guler, Gunnur |
| 2019 | G-Quadruplex enrichment analysis reveals their role as intronic regulatory elements in plants | Doluca, Osman |
| 2016 | G-quadruplex prediction in E. coli genome reveals a conserved putative G-quadruplex-Hairpin-Duplex switch | Kaplan, Oktay I.; Berber, Burak; Hekim, Nezih; Doluca, Osman |
| 2019 | G4Catchall: A G-quadruplex prediction approach considering atypical features | Doluca, Osman |
| 2024 | Identification of potential inhibitors for drug resistance in acute lymphoblastic leukemia through differentially expressed gene analysis and in silico screening | Özay, Başak; Tükel, Ezgi Yağmur; Ayna Duran, Gizem ; Kiraz, Yağmur |
| 2021 | Impact of Flanking Nucleotides on G-quadruplex Topology | Arkan, Yaren; Yesilyurt, Yagmur; Gunay, Beliz; Cogun, Yaren; Doluca, Osman |
| 2020 | Investigation of compatibility of severe acute respiratory syndrome coronavirus 2 reverse transcriptase-PCR kits containing different gene targets during coronavirus disease 2019 pandemic | Sarigul, Figen; Doluca, Osman ; Akhan, Sila; Sayan, Murat |
| 2020 | IR spektroskopi kullanılarak in vitro meme kanser kök hücrelerinin araştırılması | Öktem, Gülperi; Güven, Ümmü; Açıkgöz, Eda; Güler, Günnur |
| 2017 | İki-Foton Mikroskopi Görüntülerinde Dendrit Dikenlerinin Otomatik Olarak Bölütlendirilmesi, Sını?andırılması ve Takibi için Olasılık ve Makine Öğrenmesi Temelli Yöntemler | Israely, Inbal; Ghanı, Muhammad Usman; Atabakılachını, Naeimeh; Kılıç, Bike; Ünay, Devrim ; Argunşah, Ali Özgür; Çetin, Müjdat |
| 2019 | İnsan Genomunda Bulunan G-Dörtlülerinin Sınıflandırılarak Korunmuş Motiflerin Keşfi Ve Varyantlarının Analizi | Kaplan, Oktay İsmail; Doluca, Osman |
| 2024 | Kolanjiyokarsinom ve Hepatoselüler Karsinom Hastalarında Farklı Genler Tarafından Tetiklenen Ortak Biyolojik Yolaklar | Ayna Duran, Gizem |
| 2018 | A large electroencephalographic motor imagery dataset for electroencephalographic brain computer interfaces | Kaya, Murat; Binli, Mustafa Kemal; Ozbay, Erkan; Yanar, Hilmi; Mishchenko, Yuriy |
| 2022 | Low-Cost High-Resolution Potentiostat for Electrochemical Detection of Nucleic Acids and Biomolecular Interactions | Demirhan, Alper; Eksin, Ece; Kilic, Yalin ; Erdem, Arzum |
| 2016 | Manual and automatic size measurement of lateral ventricle and central sulci and their compliance with atrophy grade | Gökay G.; Kandemir M.; Tepe M.S.; Yalçiner B.; Ünay D. |
| 2015 | MANUAL AND AUTOMATIC SIZE MEASUREMENT OF LATERAL VENTRICLES AND CENTRAL SULCI AND THEIR COMPLIANCE WITH ATROPHY GRADE | Gokay, Gokhan; Kandemir, Melek; Tepe, M. Savas; Yalciner, Betul; Unay, Devrim |
| 2019 | Medical Decision Support Using Increasingly Large Multimodal Data Sets | Müller H.; Ünay D. |
| 2017 | Mn(II) complexes, [Mn2(mu-R1C6H3COO) 2(R2) 4].2(ClO4), (R1: Cl, NH2, CH3); R2: 1,10 '-phenanthroline or 2,2 '-bipyridine): Synthesis, oxidation of alcohols/alkenes and catalase activity | Avan, Ilker; Kilic, Yalcin ; Kani, Ibrahim |
| 2019 | Modified Visual Magnetic Resonance Rating Scale for Evaluation of Patients with Forgetfulness | Yalciner, Betul Z.; Kandemir, Melek; Taskale, Sencan; Tepe, Savas M.; Unay, Devrim |
| 2020 | NeuMoDx random access molecular diagnostic system for detection and quantification of hepatitis B virus in clinical samples | Arikan, Ayse; Sayan, Murat; Doluca, Osman |
| 2017 | Nonparametric Joint Shape and Feature Priors for Image Segmentation | Erdil, Ertunc; Ghani, Muhammad Usman; Rada, Lavdie; Argunsah, Ali Ozgur; Unay, Devrim ; Tasdizen, Tolga; Cetin, Mujdat |
| 2016 | NONPARAMETRIC JOINT SHAPE AND FEATURE PRIORS FOR SEGMENTATION OF DENDRITIC SPINES | Erdil, Ertunc; Rada, Lavdie; Argunsah, A. Ozgur; Israely, Inbal; Unay, Devrim ; Tasdizen, Tolga; Cetin, Mujdat |
| 2018 | A novel and synthetically facile coumarin-thiophene-derived Schiff base for selective fluorescent detection of cyanide anions in aqueous solution: Synthesis, anion interactions, theoretical study and DNA-binding properties | Chemchem, Meryem; Yahaya, Issah; Aydiner, Burcu; Seferoglu, Nurgul; Doluca, Osman ; Merabet, Naima; Seferoglu, Zeynel |
| 2017 | Novel keratin modified bacterial cellulose nanocomposite production and characterization for skin tissue engineering | Keskin, Zalike ; Urkmez, Aylin Sendemir; Hames, E. Esin |
| 2021 | A novel method for conserved sequence extraction with prospective mutation prediction for SARS-CoV-2 PCR primer design | Portakal, Saygin Huseyin ; Kanat, Beyza; Sayan, Murat; Berber, Burak; Doluca, Osman |
| 2016 | ON COMPARISON OF MANIFOLD LEARNING TECHNIQUES FOR DENDRITIC SPINE CLASSIFICATION | Ghani, Muhammad Usman; Argunsach, Ali Ozgur; Israely, Inbal; Unay, Devrim ; Tasdizen, Tolga; Cetin, Mujdat |
| 2022 | <p>DNA binding effects of 2,2'-bipyridine and 1,10-phenanthroline ligands synthesized with benzimidazole copper (II) complexes: Crystal structure, molecular docking, DNA binding and anti-cancer studies</p> | Unver, Hakan; Berber, Burak; Kanat, Beyza; Arafat, Mahmoud; Koparal, Ayse Tansu; Doluca, Osman |
| 2023 | Pan-Cancer Analyses Identify the RRM2 Gene as a Biomarker with Diagnostic and Prognostic Roles in Multiple Human Cancers via Interactions with the hsa-let-7a-5p miRNA and EZH2 | Ayna Duran, Gizem |
| 2018 | A passive brain-computer interface for monitoring mental attention state | Kaya M.; Aci C.; Mishchenko, Yuriy |
| 2019 | A Pattern Mining Approach in Feature Extraction for Emotion Recognition from Speech | Avcı, Umut; Akkurt, Gamze; Unay, Devrim |
| 2019 | The Performance of Local-Learning Based Clustering Feature Selection Method on the Diagnosis of Parkinson's Disease Using Structural MRI | Cigdem, Ozkan; Demirel, Hasan; Unay, Devrim |
| 2020 | Quantitative determination of H2O2 for detection of alanine aminotransferase using thin film electrodes | Saygili, Ecem; Orakci, Beyza; Koprulu, Melisa; Demirhan, Alper; Ilhan-Ayisigi, Esra; Kilic, Yalin ; Yesil-Celiktas, Ozlem |
| 2022 | Realtime Determination of Mood in Classroom Environment | Yurdakul, Eda; Ergun, Efe; Yildiz, Can; Akbugday, Burak ; Akan, Aydin ; Sokucu, Taha; Pehlivan, Sude |
| 2018 | Relaxed formation rules for G-quadruplex prediction | Doluca, Osman |
| 2017 | Retrieval From and Understanding of Large-Scale Multi-modal Medical Datasets: A Review | Mueller, Henning; Unay, Devrim |
| 2018 | Robustness of sift feature descriptors to imaging parameters in laser scanning microscopy | Ünay D. ; Stanciu S.G. |
| 2018 | Selective catalytic oxidation of alkenes employing homobinuclear manganese(II) catalysts with TBHP | Kilic, Yalcin ; Kani, Ibrahim |
| 2022 | Sequence Based Prediction of Protein-Protein Interactions via Siamese Neural Networks | Geckin, Duygu ; Demir, Guleser Kalayci |
| 2023 | Specific binding of D-Amino neuraminic acid to ganglioside studied in prostate cancer cells | Yiğittürk, Gürkan; Rouhrazi, Hadi; Aktuğ, Hüseyin; Güler, Günnur ; Demir, Kenan; Açıkgöz, Eda |
| 2020 | Substituent dependent selectivity of fluorescent chemosensors derived from coumarin for biologically relevant DNA structures and anions | Chemchem, Meryem; Yahaya, Issah; Aydiner, Burcu; Doluca, Osman ; Seferoglu, Nurgul; Seferoglu, Zeynel |
| 2020 | Synthesis and characterization of folic acid-chitosan nanoparticles loaded with thymoquinone to target ovarian cancer cells | Ince, Iskender; Yildirim, Yeliz; Guler, Gunnur ; Medine, Emin Ilker; Ballica, Gulsah; Kusdemir, Bekir Cem; Goker, Erdem |
| 2020 | Synthesis, biological properties, and acid dissociation constant of novel naphthoquinone-triazole hybrids | Nural, Yahya; Ozdemir, Sadin; Doluca, Osman ; Demir, Bunyamin; Yalcin, Mustafa Serkan; Atabey, Hasan; Kanat, Beyza |
| 2018 | Tracking-assisted Detection of Dendritic Spines in Time-Lapse Microscopic Images | Rada, Lavdie; Kilic, Bike; Erdil, Ertunc; Ramiro-Cortes, Yazmin; Israely, Inbal; Unay, Devrim ; Cetin, Mujdat |
| 2019 | Triplex-forming DNA Probe Approach for Silver Detection and the Effect of C-G·C Triplet Distribution on Triplex Stability | Doluca, Osman |
| 2024 | Understanding intercalative modulation of G-rich sequence folding: solution structure of a TINA-conjugated antiparallel DNA triplex | Garavis, Miguel; Edwards, Patrick J. B.; Serrano-Chacon, Israel; Doluca, Osman ; Filichev, Vyacheslav V.; Gonzalez, Carlos |
| 2023 | Using custom-built primers and nanopore sequencing to evaluate CO-utilizer bacterial and archaeal populations linked to bioH2 production | Akaçin, İ.; Ersoy, Ş; Doluca, Osman ; Güngörmüşler, Mine |
