| Issue Date | Title | Author(s) |
| 2022 | Ag-intercalation of Tm3+/Er3+ Co-doped layered perovskites and their exfoliated 2D nanosheets with an enhanced antibiofilm and antibacterial activity | Gunay, Bensu; Doger, Hilal; Karagonlar, Zeynep Firtina ; Saglam, Ozge |
| 2020 | Atomic Force Microscopy Investigation of the Contributions of Listeria monocytogenes Cell-Wall Biomacromolecules to Their Adherence and Mechanics | Gördesli Duatepe, Fatma Pınar ; Park, Bong J.; Kawas, Leen H.; Abu-Lail, Nehal, I |
| 2022 | Bioethanol production from C1 gases using alternative media by syngas fermentation | Gungormusler, Mine ; Azbar, Nuri; Keskin, Tugba |
| 2020 | Biogenic Nanoparticle Synthesis Using Marine Alga Schizochytrium sp. | Mutaf, Tuğçe; Çalışkan, Gülizar ; Meydan, Cafer; Oncel, Suphi Surisvan; Elibol, Murat |
| 2022 | Bioprocesses for resource recovery from waste gases: Current trends and industrial applications | Khanongnuch, Ramita; Abubackar, Harris Nalakath; Keskin, Tugba; Gungormusler, Mine ; Duman, Gozde; Aggarwal, Ayushi; Behera, Shisir Kumar |
| 2021 | Biosynthesis, Optimization and Characterization of Zinc Chloride Nanoparticles Using Sideritis sp. Extract | Ozbey, Berna Oyku; Baran, Ozlem; Çalışkan, Gülizar |
| 2021 | Changes in Wnt and TGF-beta Signaling Mediate the Development of Regorafenib Resistance in Hepatocellular Carcinoma Cell Line HuH7 | Karabiçici, Mustafa; Azbazdar, Yagmur; Ozhan, Gunes; Senturk, Serif; Firtina Karagonlar, Zeynep ; Erdal, Esra |
| 2023 | Characterization of cisplatin loaded hydrophilic glycol chitosan modified eumelanin nanoparticles for potential controlled-release application | Atik, Aleyna; Günal, Tuğce; Acar Bozkurt, Pınar; Kose, Sila Naz ; Alp, Burcak ; Yandım, Cihangir ; Kaleli, Nurettin Mete |
| 2023 | Comparative evaluation of the biohydrogen production potential of thermophilic microorganisms isolated from hot springs located in Izmir | Ersoy Ş.; Akaçin İ.; Güngörmüşler M. |
| 2022 | Comparative molecular dynamics analyses on PIK3CA hotspot mutations with PI3K alpha specific inhibitors and ATP | Mentes, Muratcan; Karakuzulu, Basak Buse; Ucar, Gonlum Bahar; Yandim, Cihangir |
| 2022 | Comparing the significance of the utilization of next generation and third generation sequencing technologies in microbial metagenomics | Akacin, Ilayda; Ersoy, Şeymanur; Doluca, Osman ; Gungormusler, Mine |
| 2022 | A comprehensive review on the development of probiotic supplemented confectioneries | Senoztop, Eylul; Dokuzlu, Tugce; Gungormusler, Mine |
| 2019 | The Conservation of VIT1-Dependent Iron Distribution in Seeds | Eroglu, Seckin ; Karaca, Nur; Vogel-Mikus, Katarina; Kavcic, Anja; Filiz, Ertugrul; Tanyolac, Bahattin |
| 2020 | The Conservation of VIT1-Dependent Iron Distribution in Seeds (vol 10, 907, 2019) | Eroglu, Seckin ; Karaca, Nur; Vogel-Mikus, Katarina; Kavcic, Anja; Filiz, Ertugrul; Tanyolac, Bahattin |
| 2020 | Demonstration of G-quadruplex-assisted hybridization chain reaction for nucleic acid detection | Kanat B.; Portakal, Hüseyin Saygın ; Doluca, Osman |
| 2022 | Development and characterization of nitrocellulose/acrylic-based coatings with precipitated silica and kaolin for packaging applications | Akarca, Tuba Kavas; Karayol, Merve; Yuzay, Isinay E. |
| 2021 | Development and Comparative Evaluation of a Novel Fermented Juice Mixture with Probiotic Strains of Lactic Acid Bacteria and Bifidobacteria | Guney, Damla; Gungormusler, Mine |
| 2021 | Development of EphA2 siRNA-loaded lipid nanoparticles and combination with a small-molecule histone demethylase inhibitor in prostate cancer cells and tumor spheroids | Oner, Ezgi; Kotmakci, Mustafa; Baird, Anne-Marie; Gray, Steven G.; Debelec Butuner, Bilge; Bozkurt, Emir ; Kantarci, Ayse Gulten |
| 2021 | Doxorubicin-induced senescence promotes stemness and tumorigenicity in EpCAM-/CD133-nonstem cell population in hepatocellular carcinoma cell line, HuH-7 | Karabiçici, Mustafa; Alptekin, Sena; Fırtına Karagonlar, Zeynep ; Erdal, Esra |
| 2019 | Dysregulated expression of repetitive DNA in ER+/HER2-breast cancer | Yandim, Cihangir ; Karakulah, Gokhan |
| 2016 | Effect of adipocyte-secreted factors on EpCAM+/CD133+hepatic stem cell population | Karagonlar, Zeynep Firtina ; Koc, Dogukan; Sahin, Eren; Avci, Sanem Tercan; Yilmaz, Mustafa; Atabey, Nese; Erdal, Esra |
| 2020 | Effect of Nutrient, Light Intensity and Temperature on the Growth Rates and Metabolism of a Stress-Resistant Bacillariophyta Species - Entomoneis sp. - in Izmir Bay (Aegean Sea) | Adalioglu, Sezgi; Çalışkan, Gülizar |
| 2016 | Elevated hepatocyte growth factor expression as an autocrine c-Met activation mechanism in acquired resistance to sorafenib in hepatocellular carcinoma cells | Karagonlar, Zeynep Firtina ; Koc, Dogukan; Iscan, Evin; Erdal, Esra; Atabey, Nese |
| 2024 | Endemic Inula Viscosa (L.) Extracts and Their Potential for Both Biosynthesizing Silver Nanoparticles and Anti-microbial Activity | Ozbey, B.O.; Çalışkan Bilgin, Gülizar |
| 2023 | Exploring PI3K Pathway Inhibitors for Acute Myeloid Leukemia: A Drug-Repurposing Approach | Ergun, C.; Kiremitci, B.Z.; Arslantas, G.; Bozkurt, B.; Ayna Duran, Gizem ; Kiraz Durmaz, Yağmur |
| 2019 | Expression dynamics of repetitive DNA in early human embryonic development | Yandim, Cihangir ; Karakulah, Gokhan |
| 2024 | Expressions of the satellite repeat HSAT5 and transposable elements are implicated in disease progression and survival in glioma | Köse, Sıla Naz ; Yaraş, Tutku; Bursalı, Ahmet; Oktay, Yavuz; Yandım, Cihangir ; Karakulah, Gökhan |
| 2021 | Fluorene/fluorenone carboxamide derivatives as selective light-up fluorophores for c-myc G-quadruplex | Duyar, Halil; Portakal, Hüseyin Saygın ; Yalcin, Ergin; Kanat, Beyza; Doluca, Osman ; Seferoglu, Zeynel |
| 2017 | Genome-wide analysis of gene expression profiling revealed that COP9 signalosome is essential for correct expression of Fe homeostasis genes in Arabidopsis | Eroglu, Seckin ; Aksoy, Emre |
| 2017 | Genome-wide exploration of metal tolerance protein (MTP) genes in common wheat (Triticum aestivum): insights into metal homeostasis and biofortification | Vatansever, Recep; Filiz, Ertugrul; Eroglu, Seckin |
| 2022 | Green Synthesis and Characterization of Titanium Nanoparticles Using Microalga, Phaeodactylum tricornutum | Çalışkan, Gülizar ; Mutaf, Tuğçe; Agba, Hasan Cenk; Elibol, Murat |
| 2020 | Green Synthesis of Metal Nanoparticles Using Microalga Galdieria sp. | Çalışkan, Gülizar ; Mutaf, Tuğçe; Oncel, Suphi Surisvan; Elibol, Murat |
| 2023 | Green synthesis of titanium nanoparticles using a sustainable microalgal metabolite solution for potential biotechnological activities | Mutaf, Tugce; Çalışkan, Gülizar ; Özel, Hulki; Akağaç, Gülşah; Öncel, Suphi S.; Elibol, Murat |
| 2024 | Green synthesized silver nanoparticles in two stages: Box Behnken Design to machine learning | Çalışkan, Gülizar ; Kumluca Topallı, Ayca |
| 2021 | Hydrogen Production by Immobilized Cells of Clostridium intestinale Strain URNW Using Alginate Beads | Gungormusler, Mine ; Tamayol, Ali; Levin, David B. |
| 2021 | Identification of differentially expressed genomic repeats in primary hepatocellular carcinoma and their potential links to biological processes and survival | Karakulah, Gokhan; Yandim, Cihangir |
| 2024 | Identification of potential inhibitors for drug resistance in acute lymphoblastic leukemia through differentially expressed gene analysis and in silico screening | Özay, Başak; Tükel, Ezgi Yağmur; Ayna Duran, Gizem ; Kiraz, Yağmur |
| 2023 | Identification of PPA1 inhibitor candidates for potential repurposing in cancer medicine | Menteş, Muratcan; Yandım, Cihangir |
| 2023 | In Silico Approach for Identification of PI3K/mTOR Dual Inhibitors for Multiple Myeloma Treatment | Masalacı, İlke; Akdoğan, Yaren; Mutlu Özge; Eyvaz, Hande; Kıraz, Yağmur |
| 2024 | In Silico Drug Repurposing Against PSMB8 as a Potential Target for Acute Myeloid Leukemia Treatment | Tukel, Ezgi Yağmur; Ateş, Onur; Kiraz, Yağmur |
| 2022 | In silico drug screen reveals potential competitive MTHFR inhibitors for clinical repurposing | Keske, Nazligul; Ozay, Basak; Tukel, Ezgi Yagmur; Mentes, Muratcan; Yandim, Cihangir |
| 2024 | Integrated systems biology analysis of acute lymphoblastic leukemia: unveiling molecular signatures and drug repurposing opportunities | Budak, Betül; Tükel, Ezgi Yağmur; Turanlı, Beste; Kiraz, Yağmur |
| 2021 | Investigation the functions of novel g-quadruplex structures in e. coli genome | Portakal, Hüseyin Saygın |
| 2017 | Kinetics of carbon dioxide absorption by nonaqueous solutions of promoted sterically hindered amines | Gordesli Duatepe, Fatma Pinar ; Orhan, Ozge Yuksel; Alper, Erdogan |
| 2021 | LGR5/R-Spo1/Wnt3a axis promotes stemness and aggressive phenotype in hepatoblast-like hepatocellular carcinoma cell lines | Akbari, Soheil; Kunter, Imge; Azbazdar, Yagmur; Ozhan, Gunes; Atabey, Nese; Karagonlar, Zeynep Firtina ; Erdal, Esra |
| 2023 | Metal nanopartiküllerin mikroalgler aracılığı ile yeşil sentezi | Mutaf, Tuğçe; Çalışkan Bilgin, Gülizar ; Öncel, Suphi; Elibol, Murat |
| 2017 | Metal Tolerance Protein 8 Mediates Manganese Homeostasis and Iron Reallocation during Seed Development and Germination | Eroglu, Seckin ; Giehl, Ricardo F. H.; Meier, Bastian; Takahashi, Michiko; Terada, Yasuko; Ignatyev, Konstantin; Andresen, Elisa |
| 2018 | Metal Transport in the Developing Plant Seed | Eroglu, Seckin |
| 2023 | Modelling the Sorafenib-resistant Liver Cancer Microenvironment by Using 3-D Spheroids | Sarıyar, E.; Fırtına Karagonlar, Zeynep |
| 2022 | Molecular characterization of multiple myeloma | Kiremitçi, B. Zeren; Gürler, Elif Serap; Kiraz, Yağmur |
| 2023 | Molecular Docking Mediated Virtual Drug Screening for GABAA Receptor: Promising Digoxin Derivatives | Portakal, Hüseyin Saygın |
| 2020 | Molecular subtype-specific responses of colon cancer cells to the SMAC mimetic Birinapant | Fichtner, Michael; Bozkurt, Emir ; Salvucci, Manuela; McCann, Christopher; McAllister, Katherine A.; Halang, Luise; Duessmann, Heiko |
| 2024 | New insights into Chlorella vulgaris applications | Al-Hammadi, Mohammed; Güngörmüşler, Mine |
| 2020 | A Novel Function for KLF4 in Modulating the De-Differentiation of EpCAM(-)/CD133(-) nonStem Cells into EpCAM(+)/CD133(+) Liver Cancer Stem Cells in HCC Cell Line HuH7 | Karagonlar, Zeynep Firtina ; Akbari, Soheil; Karabiçici, Mustafa; Sahin, Eren; Avci, Sanem Tercan; Ersoy, Nevin; Ates, Kivilcim Eren |
| 2021 | A novel method for conserved sequence extraction with prospective mutation prediction for SARS-CoV-2 PCR primer design | Portakal, Saygin Huseyin ; Kanat, Beyza; Sayan, Murat; Berber, Burak; Doluca, Osman |
| 2022 | OPTIMIZATION OF BIOHYDROGEN PRODUCTION YIELDS WITH LOCALLY ISOLATED THERMOPHILIC BACTERIA FROM HOT SPRINGS | Akaçin İ.; Ersoy Ş.; Gündoğdu T.K.; Güngörmüşler M. |
| 2023 | Optimizing biohydrogen production yields by employing locally isolated thermophilic bacteria from hot springs | Akaçin, İ.; Ersoy, Ş.; Keskin, T.; Nalakath, Abubackar, H.; Güngörmüşler, Mine |
| 2020 | Optimum formulation determination and carbon footprint analysis of a novel gluten-free pasta recipe using buckwheat, teff, and chickpea flours | Gungormusler, Mine ; Basinhan, Irem; Uctug, Fehmi Gorkem |
| 2021 | Planktonik Ve Biyofilmden-Dagılmıs Hücrelerin Yüzeylere Adhezyon Kuvvetleri Ve Hücre Yüzeyi Fizyokimyasal Özellikleri | Duatepe, Fatma Pınar Gördesli |
| 2021 | Prediction of Sleep Apnea Using EEG Signals and Machine Learning Algorithms | Onargan, Aysu; Gavcar, Busra; Çalışkan, Gülizar ; Akan, Aydin |
| 2021 | Production of Value-Added Bioproducts Using a Modified Continuous Biofilm Reactor by Citrobacter Freundii DSM 15979 | Güngörmüşler, Mine |
| 2022 | Promoting Utilization of Biofuels in The Transportation Sector to Reduce CO2 Emissions: Comparative Analysis | Bozbay, Utku; Gungormusler, Mine |
| 2022 | Promoting Utilization of Biofuels in The Transportation Sector to Reduce CO2 Emissions: Comparative Analysis | Bozbay, Utku; Güngörmüşler, Mine |
| 2022 | Repeat expression is linked to patient survival and exhibits single nucleotide variation in pancreatic cancer revealing LTR70:r.879A > G | Yandim, Cihangir ; Karakulah, Gokhan |
| 2019 | Responses of Acinetobacter baumannii Bound and Loose Extracellular Polymeric Substances to Hyperosmotic Agents Combined with or without Tobramycin: An Atomic Force Microscopy Study | Deliorman, Muhammedin; Gördesli Duatepe, Fatma Pınar ; Davenport, Emily K.; Fransson, Boel A.; Call, Douglas R.; Beyenal, Haluk; Abu-Lail, Nehal I. |
| 2020 | Signature changes in the expressions of protein-coding genes, lncRNAs, and repeat elements in early and late cellular senescence | Karakulah, Gokhan; Yandim, Cihangir |
| 2024 | Suppression of CTC1 inhibits hepatocellular carcinoma cell growth and enhances RHPS4 cytotoxicity | Kıpçak, Arda; Sezan, Sıla; Karpat, Özüm; Kaya, Ezgi; Baylan, Sude; Sarıyar, Ece; Yandım, Cihangir |
| 2019 | TEffectR: an R package for studying the potential effects of transposable elements on gene expression with linear regression model | Karakulah, Gokhan; Arslan, Nazmiye; Yandim, Cihangir ; Suner, Asli |
| 2021 | Three-Dimensional Cell Culture Models of Hepatocellular Carcinoma - a Review | Ayvaz, Irmak; Sunay, Dilara; Sariyar, Ece; Erdal, Esra; Karagonlar, Zeynep Firtina |
| 2021 | TRAIL signaling promotes entosis in colorectal cancer | Bozkurt, Emir ; Dussmann, Heiko; Salvucci, Manuela; Cavanagh, Brenton L.; Van Schaeybroeck, Sandra; Longley, Daniel B.; Martin, Seamus J. |
| 2021 | Upconversion properties of Tm3+-Er3+ co-doped layered perovskites and in-vitro cytotoxicity of their exfoliated nanomaterials | Gunay, Bensu; Sariyar, Ece; Unal, Ugur; Karagonlar, Zeynep Firtina ; Saglam, Ozge |
| 2023 | Using custom-built primers and nanopore sequencing to evaluate CO-utilizer bacterial and archaeal populations linked to bioH2 production | Akaçin, İ.; Ersoy, Ş; Doluca, Osman ; Güngörmüşler, Mine |
| 2022 | Utilizing response surface methodology to evaluate the process parameters of indigenous cucumber fermentation | Gul, Hazal; Gungormusler, Mine |
| 2023 | Virtual drug screening for p65/rela subunit of nf-κb: Promising repurposable drugs in the treatment of stress-based diseases | Portakal, Hüseyin Saygın |
